Package: AgePopDenom 0.4.0

Mohamed A. Yusuf

AgePopDenom: Model Fine-Scale Age-Structured Population Data using Open-Source Data

Automate the modelling of age-structured population data using survey data, grid population estimates and urban-rural extents.

Authors:Mohamed A. Yusuf [aut, cre], Victor A. Alegana [aut], Chris Nnanatu [aut], Andrew Tatem [aut]

AgePopDenom_0.4.0.tar.gz
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AgePopDenom.pdf |AgePopDenom.html✨
AgePopDenom/json (API)

# Install 'AgePopDenom' in R:
install.packages('AgePopDenom', repos = c('https://truenomad.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/truenomad/agepopdenom/issues

Pkgdown site:https://truenomad.github.io

On CRAN:

Conda:

4.60 score 1 stars 3 scripts 25 exports 62 dependencies

Last updated 15 days agofrom:73e4a016a8. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 26 2025
R-4.5-winOKFeb 26 2025
R-4.5-macOKFeb 26 2025
R-4.5-linuxOKFeb 26 2025
R-4.4-winOKFeb 26 2025
R-4.4-macOKFeb 26 2025
R-4.3-winOKFeb 26 2025
R-4.3-macOKFeb 26 2025

Exports:aggregate_and_extract_gammacompute_covcreate_prediction_datacreate_project_structuredownload_dhs_datasetsdownload_pop_rastersdownload_shapefileextract_afurextentextract_age_paramextract_betasfit_spatial_modelgenerate_age_pop_rastergenerate_age_pop_tablegenerate_age_pyramid_plotgenerate_gamma_predictionsgenerate_gamma_raster_plotgenerate_variogram_plotinitinstall_suggested_packageslog_likprocess_dhs_dataprocess_final_population_dataprocess_gamma_predictionsrasterize_datarun_full_workflow

Dependencies:askpassclassclassIntclicolorspacecpp11curlDBIdplyre1071exactextractrfansifarvergenericsggplot2gluegtablehttrisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmenumDerivopensslpdistpillarpkgconfigproxypurrrR6rasterRColorBrewerRcppRcppEigenrlangs2scalessfspstringistringrsysterratibbletidyrtidyselectTMBunitsutf8vctrsviridisLitewithrwk

Using AgePopDenom

Rendered fromusing_agepopdenom.Rmdusingknitr::rmarkdownon Feb 26 2025.

Last update: 2025-01-20
Started: 2025-01-17

Readme and manuals

Help Manual

Help pageTopics
Aggregate Individual Survey Data and Extract Gamma Parameters by Locationaggregate_and_extract_gamma
Compute Covariance Matrix for Spatial Modelcompute_cov
Generate or Load Cached Predictors Datacreate_prediction_data
Create a Standardized Project Folder Structurecreate_project_structure
Main Function to Download DHS Datasetsdownload_dhs_datasets
Download population rasters for given country codes.download_pop_rasters
Download WHO ADM2 Boundaries with Partial Updatedownload_shapefile
Extract Urban/Rural Extent Rasterextract_afurextent
Extract Parameters and Optimization Details with Log-Likelihoodextract_age_param
Extract Beta Parameters from Model Outputextract_betas
Fit a Spatial Model for Age Parameters using TMBfit_spatial_model
Generate Age Population Rastergenerate_age_pop_raster
Generate Age Population Tablesgenerate_age_pop_table
Generate and Save Age Pyramid Plotgenerate_age_pyramid_plot
Predict Gamma Distribution Parameters for Spatial Gridgenerate_gamma_predictions
Generate and Save Raster Plot for Gamma Predictionsgenerate_gamma_raster_plot
Generate Variogram Plotgenerate_variogram_plot
Initialize Full Pipeline Script and Model Scriptinit
Log-Likelihood Function for Spatial Modellog_lik
Process DHS Data: Merge RDS Files with Shapefiles and Extract Gamma Parametersprocess_dhs_data
Process Final Population Dataprocess_final_population_data
Process Gamma Prediction Resultsprocess_gamma_predictions
Rasterize Spatial Datarasterize_data
Run Country-Specific Spatial Modeling Workflow with Loggingrun_full_workflow